Markers
| Species | Tissue | Cell type | Core markers | Actions |
|---|---|---|---|---|
| Human | Testis | Early quiescent spermatogonia State 0 |
PIWIL4UTF1TSPAN33FGFR3
|
|
| Human | Testis | GFRA1-enriched spermatogonia State 1 |
GFRA1UTF1FGFR3
|
|
| Human | Testis | SSC1 |
UTF1
|
|
| Human | Testis | SSC2 |
GFRA1ZBTB16
|
|
| Human | Testis | SSC3 |
SMS
|
|
| Human | Testis | Differentiating and differentiated spermatogonia |
KITTKTL1DMRT1
|
|
| Human | Testis | Proliferating spermatogonia |
MKI67KIT
|
|
| Human | Testis | Meiotic spermatocytes |
SYCP3SPO11MLH3
|
|
| Human | Testis | Round spermatids |
SPAG6ZPBPCAMK4CREM
|
|
| Human | Testis | Condensing and elongating spermatids |
TNP1PRM2
|
|
| Human | Testis | Sertoli cells |
SOX9AMHWFDC2PRND
|
|
| Human | Testis | Immature Sertoli state |
JUNENO1EGR3
|
|
| Human | Testis | Mature Sertoli state |
DEFB119HOPX
|
|
| Human | Testis | Leydig cells |
DLK1IGF1INHBAVIT
|
|
| Human | Testis | Peritubular myoid cells |
MYH11ACTA2
|
|
| Human | Testis | Vascular endothelial cells |
VWFPECAM1
|
|
| Human | Testis | Macrophages |
CD163C1QA
|
|
| Mouse | Testis | Undifferentiated SPG1 state |
Id4Gfra1Etv5Zbtb16
|
|
| Mouse | Testis | Differentiation-initiating SPG2 state |
Lmo1Tcea3
|
|
| Mouse | Testis | Differentiating SPG3 state |
Tead2Esx1
|
|
| Mouse | Testis | Differentiating SPG4 state |
Nr2c2Nfat5Hif1a
|
|
| Mouse | Testis | Differentiation and preparation for meiosis |
KitStra8
|
|
| Mouse | Testis | Leptotene and zygotene recombination state |
Prdm9Spo11MeiobDmc1
|
|
| Mouse | Testis | Mid-to-late pachytene |
Hist1h1t
|
|
| Mouse | Testis | Pachytene-to-round-spermatid transition |
Sox30
|
|
| Mouse | Testis | Sertoli cells |
Sox9
|
|
| Mouse | Testis | Leydig cells |
Hsd3b1
|
|
| Mouse | Testis | Peritubular myoid cells |
Acta2
|
|
| Mouse | Testis | Vascular endothelial cells |
Vwf
|
|
| Mouse | Testis | Macrophages |
Adgre1
|
|
| Human | Epididymis | Principal cells |
DEFB119DEFB118CST11SPAG11B
|
|
| Human | Epididymis | Apical and narrow joint cluster |
CRISP1WFDC8SPINK13
|
|
| Human | Epididymis | Apical-like state |
GSTM3CRISP1
|
|
| Human | Epididymis | Narrow-like state |
HEXBCA8
|
|
| Human | Epididymis | Basal cells |
KRT5KRT17TP63CLDN1
|
|
| Human | Epididymis | Clear cells |
ATP6V1G3CFTRFOXI1
|
|
| Human | Epididymis | VIL1-enriched cells |
VIL1FXYD2ESR1
|
|
| Human | Epididymis | CFTR-enriched cells |
CFTRESR1
|
|
| Human | Epididymis | Stromal and muscle joint cluster |
VIM
|
|
| Mouse | Epididymis | Initial-segment principal cells |
Rnase10Cst11Lcn2Mfge8
|
|
| Mouse | Epididymis | Distal caput principal cells |
Lcn2Defb15
|
|
| Mouse | Epididymis | Corpus segments 5–6 |
Lcn5Rnase9Plac8
|
|
| Mouse | Epididymis | Corpus segment 7 |
Npy
|
|
| Mouse | Epididymis | Cauda segments 8–9 |
Gpx3Klk1b27Gstm2
|
|
| Mouse | Epididymis | Cauda segment 10 |
PtgdsSpink10Crisp1
|
|
| Mouse | Epididymis | Clear cells |
Atp6v0cAtp6v1aDmxl1
|
|
| Mouse | Epididymis | Iapp-positive clear cells |
IappAtp6v1a
|
|
| Mouse | Epididymis | Basal cells |
Krt5Krt14Itga6Cldn4
|
|
| Mouse | Epididymis | Smooth muscle cells |
Myh11MylkTpm2
|
|
| Mouse | Epididymis | Myoid stromal cells |
TaglnMyl9Tpm2Acta2
|
|
| Mouse | Epididymis | Inflammation-associated macrophages |
Ccl3Cd14Tnf
|
|
| Mouse | Epididymis | Trem2-enriched macrophages |
Trem2Wfdc17Csf1rLyz2
|
|
| Mouse | Epididymis | Dendritic cells |
Ccr7BtlaH2-AaH2-Ab1
|
|
| Mouse | Epididymis | T cells |
Cd3dCd3eCd3g
|
|
| Mouse | Epididymis | Endothelial cells |
Cd34Tm4sf1Icam2Emcn
|
|
| Mouse | Epididymis | Arterial and angiogenesis-associated endothelium |
Dll4Sox17Rgcc
|
|
| Mouse | Epididymis | Venous-associated endothelium |
VwfVcam1Selp
|
|
| Mouse | Epididymis | Lymphatic-associated endothelial state |
Prox1Thy1Fxyd6
|
|
| Mouse | Vas deferens | Vas deferens epithelium |
Abcg2Fxyd4Aqp2
|
|
| Mouse | Vas deferens | Smooth muscle cells |
Myh11MylkTpm2
|
|
| Mouse | Vas deferens | Lgr5-enriched stromal cells |
Lgr5Angpt1Tspan8
|
|
| Mouse | Vas deferens | Secretory fibroblasts |
Ptx3TslpIl6Cxcl12
|
|
| Mouse | Vas deferens | Clear cells |
Atp6v0cAtp6v1aDmxl1
|
|
| Mouse | Vas deferens | Basal cells |
Krt5Krt14Itga6Cldn4
|
|
| Mouse | Vas deferens | Myoid stromal cells |
TaglnMyl9Tpm2Acta2
|
|
| Mouse | Vas deferens | Inflammation-associated macrophages |
Ccl3Cd14Tnf
|
|
| Mouse | Vas deferens | Trem2-enriched macrophages |
Trem2Wfdc17Csf1rLyz2
|
|
| Mouse | Vas deferens | Dendritic cells |
Ccr7BtlaH2-AaH2-Ab1
|
|
| Mouse | Vas deferens | T cells |
Cd3dCd3eCd3g
|
|
| Mouse | Vas deferens | Endothelial cells |
Cd34Tm4sf1Icam2Emcn
|
|
| Human | Corpus cavernosum | PI16-enriched fibroblasts |
PI16PDGFRA
|
|
| Human | Corpus cavernosum | APOC1-enriched fibroblasts |
APOC1PDGFRA
|
|
| Human | Corpus cavernosum | COMP-enriched fibroblasts |
COMPPDGFRA
|
|
| Human | Corpus cavernosum | FB1 |
APOC1PTCHD1
|
|
| Human | Corpus cavernosum | FB2 |
APOC1PPP1R14A
|
|
| Human | Corpus cavernosum | FB3 |
PI16FMO2
|
|
| Human | Corpus cavernosum | FB4 |
PI16BMP7
|
|
| Human | Corpus cavernosum | FB5 |
COMPKERA
|
|
| Human | Corpus cavernosum | FB6 |
COMPMFAP5
|
|
| Human | Corpus cavernosum | Cavernosal trabecular smooth muscle SMC2 |
ACTA2MYH11DES
|
|
| Human | Corpus cavernosum | Vascular smooth muscle SMC1 |
ACTA2MYH11
|
|
| Human | Corpus cavernosum | Pericytes SMC3 |
KCNJ8THY1
|
|
| Human | Corpus cavernosum | Myofibroblast state SMC4 |
LUMACTA2
|
|
| Human | Corpus cavernosum | Cavernosal trabecular endothelium EC1 |
VWFPECAM1KIT
|
|
| Human | Corpus cavernosum | Inflammation-associated endothelium EC2 |
ACKR1SELESELP
|
|
| Human | Corpus cavernosum | Arterial endothelium EC3 |
VWFPECAM1GJA5
|
|
| Human | Corpus cavernosum | Mesenchymal-transition-associated endothelium EC4 |
IGF1VWFCOL1A1
|
|
| Human | Corpus cavernosum | Schwann cells |
S100B
|
|
| Human | Corpus cavernosum | Macrophages |
CD163
|
|
| Human | Corpus cavernosum | T cells |
CD3E
|
|
| Rat | Corpus cavernosum | Fibroblasts (FB) |
DcnLumPdgfra
|
|
| Rat | Corpus cavernosum | Proliferating fibroblasts (FB.pro) |
Mki67Top2aUbe2c
|
|
| Rat | Corpus cavernosum | Cavernosal smooth muscle (CCSMC) |
Acta2Myh11Actg2
|
|
| Rat | Corpus cavernosum | Vascular smooth muscle (VSMC) |
Myh11Cnn1Actg2
|
|
| Rat | Corpus cavernosum | Endothelial cells (EC) |
VwfKdrCdh5
|
|
| Rat | Corpus cavernosum | Adipocytes |
AdipoqPlin1Fabp4Lpl
|
|
| Rat | Corpus cavernosum | Immune cells |
PtprcLyz2Cd68C1qa
|
|
| Human | Prostate | Secretory luminal epithelium |
KLK3KRT18DHRS7
|
|
| Human | Prostate | Basal epithelium |
KRT5KRT14
|
|
| Human | Prostate | Club-like epithelium |
SCGB1A1
|
|
| Human | Prostate | Hillock-like epithelium |
KRT13KRT5
|
|
| Human | Prostate | Neuroendocrine epithelium |
CHGACHGB
|
|
| Human | Prostate | Smooth muscle cells |
ACTA2MYH11MYL9TPM2
|
|
| Human | Prostate | Fibroblasts |
FGF7PTGDSRSPO3SFRP2
|
|
| Human | Prostate | Endothelial cells |
CD200
|
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Catalog categories support search and browsing. Cell annotation should still consider expression strength, cell state, sample context, and multi-gene evidence rather than treating one gene as definitive.